MDT

MDT is a module for protein structure analysis.

Contents

• Introduction
  • MDT features
  • Dependent and independent features
  • Specification of bins
  • Storage for bin data
• Usage
  • Running pre-built binaries
  • Using with Anaconda Python
  • Using a Homebrew package
  • Compilation from source code
  • Example MDT script
• Sample studies with MDT
  • Introduction
  • Stereochemical restraints
  • Non-bonded restraints
• The mdt Python module
  • Setup of the MDT system
  • Creation and manipulation of data tables
  • Library information
  • Utility functions
  • Bin storage types
  • Exceptions
• The mdt.features Python module
  • Protein features
  • Protein pair features
  • Residue features
  • Residue pair features
  • Aligned residue features
  • Aligned residue pair features
  • Atom features
  • Atom pair features
  • Tuple features
  • Tuple pair features
  • Chemical bond features
  • Group features
• Copyright and license
• MDT change history
  • HEAD
  • MDT 5.4 05-25-2017
  • MDT 5.3 05-19-2015
  • MDT 5.2 10-29-2012
  • MDT 5.1 09-29-2011
  • MDT 5.0 03-31-2011
  • MDT 4.0 April 2002
  • MDT 3.1 March 2002

Indices and tables

• Index
• Search Page