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MDT¶

MDT is a module for protein structure analysis.

Contents¶

  • Introduction
    • MDT features
    • Dependent and independent features
    • Specification of bins
    • Storage for bin data
  • Usage
    • Running pre-built binaries
    • Using with Anaconda Python
    • Using a Homebrew package
    • Compilation from source code
    • Example MDT script
  • Sample studies with MDT
    • Introduction
    • Stereochemical restraints
    • Non-bonded restraints
  • The mdt Python module
    • Setup of the MDT system
    • Creation and manipulation of data tables
    • Library information
    • Utility functions
    • Bin storage types
    • Exceptions
  • The mdt.features Python module
    • Protein features
    • Protein pair features
    • Residue features
    • Residue pair features
    • Aligned residue features
    • Aligned residue pair features
    • Atom features
    • Atom pair features
    • Tuple features
    • Tuple pair features
    • Chemical bond features
    • Group features
  • Copyright and license
  • MDT change history
    • HEAD
    • MDT 5.6 06-02-2025
    • MDT 5.5 04-07-2020
    • MDT 5.4 05-25-2017
    • MDT 5.3 05-19-2015
    • MDT 5.2 10-29-2012
    • MDT 5.1 09-29-2011
    • MDT 5.0 03-31-2011
    • MDT 4.0 April 2002
    • MDT 3.1 March 2002

Indices and tables¶

  • Index

  • Search Page

Table of Contents

  • MDT
  • Contents
  • Indices and tables

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